##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index14_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	23416127	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.144037824871724	33.0	31.0	34.0	31.0	34.0
2	32.41199332408814	34.0	31.0	34.0	31.0	34.0
3	32.443461721914986	34.0	31.0	34.0	31.0	34.0
4	36.0833400843786	37.0	35.0	37.0	35.0	37.0
5	35.975894348369394	37.0	35.0	37.0	35.0	37.0
6	35.96897749145279	37.0	35.0	37.0	35.0	37.0
7	35.945144130794986	37.0	35.0	37.0	35.0	37.0
8	35.89674240321638	37.0	35.0	37.0	35.0	37.0
9	37.63435383656742	39.0	37.0	39.0	35.0	39.0
10-14	37.869784341364394	39.2	37.2	39.4	35.0	39.4
15-19	38.83586115671477	40.0	38.0	41.0	35.0	41.0
20-24	38.67683525119248	40.0	38.0	41.0	34.0	41.0
25-29	38.34885417216945	40.0	38.0	41.0	34.0	41.0
30-34	38.30413588036997	40.0	38.0	41.0	33.8	41.0
35-39	38.0170932537221	40.0	37.4	41.0	33.0	41.0
40-44	37.94107178356181	40.0	37.0	41.0	33.0	41.0
45-49	37.62332711126824	39.6	36.4	41.0	32.4	41.0
50-54	37.075914210748856	39.0	35.2	41.0	31.2	41.0
55-59	36.40034260148999	38.2	35.0	40.0	30.6	41.0
60-64	35.64286709753496	36.8	34.0	40.0	29.6	41.0
65-69	34.72859889254956	35.6	33.6	39.0	28.6	40.6
70-74	33.73380445878176	35.0	33.0	37.4	27.2	39.8
75-79	32.72846934935056	34.8	31.8	36.2	26.0	38.8
80-84	32.10414032175346	35.0	32.0	35.2	25.6	37.0
85-89	31.02334086247482	34.0	31.2	35.0	23.2	36.0
90	30.087916289487154	34.0	31.0	35.0	15.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	2.0
11	9.0
12	122.0
13	925.0
14	4211.0
15	11384.0
16	20194.0
17	28853.0
18	36956.0
19	45360.0
20	54890.0
21	64867.0
22	75610.0
23	89663.0
24	109591.0
25	137418.0
26	176996.0
27	227999.0
28	296076.0
29	379445.0
30	479982.0
31	605127.0
32	763148.0
33	984771.0
34	1334933.0
35	1931495.0
36	3024083.0
37	4535698.0
38	5188298.0
39	2761234.0
40	46787.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.293198617305226	13.043824801473273	10.487207539225707	50.1757690419958
2	22.296808520042617	19.402448577427002	35.384587724519946	22.916155178010435
3	25.556621724848007	21.687023648274543	23.09690667461788	29.659447952259573
4	27.59394839291741	28.044244891565544	19.596349131519485	24.76545758399756
5	29.23636236295742	30.009642946214736	21.465360555652353	19.288634135175485
6	24.041764037238096	32.99211692864495	21.834601426615087	21.131517607501873
7	21.359001853722436	18.82838694887502	37.68883299958187	22.123778197820673
8	21.55381203731941	22.137388475899535	29.162188093701406	27.14661139307965
9	21.554875407021836	20.980386722364464	31.623103171587687	25.841634699026017
10-14	24.592976455927147	26.28261966635217	24.71581487408229	24.40858900363839
15-19	24.98433579558225	25.147664257201885	25.144471585757973	24.7235283614579
20-24	24.743563482924085	25.405678961389977	25.44814712909737	24.402610426588566
25-29	24.670982054883517	25.424722146832522	25.359251832652912	24.545043965631045
30-34	24.68588756447073	25.350687705006408	25.33302422818315	24.630400502339715
35-39	24.724757369879708	25.47901081212196	25.268943233562336	24.52728858443599
40-44	24.655636538661497	25.312392969192633	25.448259766464943	24.58371072568093
45-49	24.605321361534997	25.369186570140712	25.370682159480335	24.65480990884396
50-54	24.634619009783222	25.43618473848478	25.414381556101745	24.514814695630246
55-59	24.669028100065503	25.375005879696012	25.35666660923989	24.599299410998597
60-64	24.573961099894802	25.40030874140568	25.460247840063143	24.565482318636374
65-69	24.59847023704966	25.504167812532046	25.44132721420865	24.45603473620965
70-74	24.65931692008105	25.42897618165245	25.365844521254594	24.545862377011904
75-79	24.63698710208316	25.40299493429337	25.432143671337883	24.527874292285585
80-84	24.560290357910674	25.538576804489704	25.441608338480087	24.459524499119535
85-89	24.656667797489156	25.510881352868093	25.34879897862635	24.483651871016406
90	24.4006138857639	25.590330372505086	25.555512422807862	24.453543318923153
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.46896765930103
2	45.21296369805305
3	55.21606967710757
4	52.35940597691497
5	48.52499649813291
6	45.17328164473997
7	43.48278005154311
8	48.700423430399056
9	47.39651010604785
10-14	49.00156545956554
15-19	49.70786415704014
20-24	49.146173909512655
25-29	49.21602602051456
30-34	49.31628806681044
35-39	49.2520459543157
40-44	49.23934726434243
45-49	49.260131270378956
50-54	49.14943370541347
55-59	49.2683275110641
60-64	49.13944341853117
65-69	49.054504973259306
70-74	49.205179297092954
75-79	49.16486139436875
80-84	49.01981485703021
85-89	49.14031966850556
90	48.854157204687056
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	3.0
1	2.0
2	1.0
3	2.0
4	4.0
5	7.5
6	9.5
7	15.0
8	26.5
9	43.0
10	54.0
11	83.0
12	148.0
13	267.0
14	426.0
15	660.0
16	1135.5
17	2044.5
18	3629.5
19	6437.5
20	8252.0
21	11220.5
22	18848.0
23	30521.0
24	46887.0
25	69375.5
26	98629.5
27	134572.0
28	173860.0
29	216564.5
30	239806.0
31	263006.5
32	309991.0
33	361487.0
34	417104.0
35	471127.5
36	527480.0
37	588613.0
38	641104.0
39	685394.0
40	708092.0
41	723191.0
42	753948.0
43	780545.5
44	796452.0
45	805869.0
46	805716.5
47	798933.0
48	798448.0
49	800925.5
50	801707.0
51	794776.0
52	786905.5
53	775320.5
54	769414.0
55	768936.5
56	755722.5
57	739224.0
58	716776.0
59	686412.0
60	669995.0
61	652221.0
62	612093.0
63	562244.5
64	505721.5
65	448334.5
66	388175.0
67	325733.0
68	269297.0
69	215714.0
70	187926.0
71	164366.0
72	120986.5
73	85280.0
74	56231.5
75	34029.5
76	19244.0
77	10012.0
78	4667.5
79	1988.5
80	1167.0
81	838.0
82	345.5
83	152.5
84	91.0
85	44.0
86	23.5
87	19.0
88	13.5
89	5.5
90	4.0
91	4.0
92	3.5
93	2.5
94	1.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.23397976958358657
2	0.0
3	0.0
4	0.0
5	2.0071636953455197E-4
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	8.541122107853275E-7
25-29	7.77242111814648E-5
30-34	0.002470092513591167
35-39	0.005064031297746207
40-44	0.007360739032547953
45-49	0.002598209345208966
50-54	0.016861883265323938
55-59	0.003419865291984451
60-64	1.1018047519130725E-4
65-69	2.3317263354439443E-4
70-74	0.003989558136578265
75-79	0.0015425266526783016
80-84	2.6050422428952494E-4
85-89	5.654222835398869E-4
90	1.8790468637277206E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.3416127E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.650567989885246
#Duplication Level	Relative count
1	100.0
2	31.903505224849425
3	16.748249515823527
4	10.503969182965502
5	7.1445293379019725
6	5.266350267095154
7	4.190520782344053
8	3.3179390044054737
9	2.7582097175814586
10++	30.991550854491667
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	6015530	2.9302144	5.1304116	2
CCAGG	4904295	2.5900612	5.1481442	1
CCTGG	4917655	2.5823765	6.0680733	1
GAAGA	5007545	2.555505	5.2268906	2
CTTCT	5124575	2.5395052	5.437215	1
AAGAA	5019695	2.5027416	5.0930753	2
CTGGA	4735035	2.4442406	8.502225	1
TCCAG	4624275	2.3724217	5.325851	2
CTCCT	4570620	2.317283	6.79573	1
CTGGG	4316030	2.2804387	8.060855	1
CAGGA	4294025	2.229242	5.408155	1
CTTCA	4409420	2.1975796	5.479634	1
CCCAG	4168220	2.18782	6.8979373	1
CTCCA	4290575	2.187718	7.187651	1
CAGAA	4139315	2.0994616	5.077109	1
CTCTG	4028655	2.0551164	6.1592293	1
CTGGC	3580235	1.8800657	5.1114573	1
TGGAA	3655855	1.855107	5.1435533	2
CTGAA	3671060	1.8513948	5.3812666	1
CTCAG	3416590	1.7528354	5.980802	1
CTTTG	3412765	1.7016494	5.0076976	1
CTTGG	3177120	1.6307315	5.2297015	1
>>END_MODULE
